John Mueller in the Friday morning’s Google Hangout on Google+ said at the 54 minute mark that if you get a manual action and you want to submit a reconsideration request, you need to make sure the file is submitted to the canonical version of the domain with the manual action. If you are unsure, he said you can post the disavow file on all versions of the domain name if you want.
The question was:
His answer was:
Here is the video embed:
Forum discussion at Google+.